PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00015.38
Common NameAMTR_s00015p00181570
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family WRKY
Protein Properties Length: 512aa    MW: 54575.6 Da    PI: 6.6253
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00015.38genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.51.9e-30266323359
                                              -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                                     WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                              Dg++WrKYGqK  kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+
  evm_27.model.AmTr_v1.0_scaffold00015.38 266 DGCQWRKYGQKLAKGNPCPRAYYRCTMAaGCPVRKQVQRCAEDRSILITTYEGNHNHP 323
                                              9**************************99****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.3E-33249325IPR003657WRKY domain
SuperFamilySSF1182902.35E-27258325IPR003657WRKY domain
PROSITE profilePS5081129.562259325IPR003657WRKY domain
SMARTSM007741.6E-36264324IPR003657WRKY domain
PfamPF031064.1E-27266323IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0016036Biological Processcellular response to phosphate starvation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0080169Biological Processcellular response to boron-containing substance deprivation
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MDLSATFNST KLNEKSSHCE VDFLSDKKSG FVRTRRLEDF EVKKKIKEEE LLDVNTGLRL  60
LTGNNNSSSH QSTLEDDDMG TPGNRKGNNE VNVLQAELER VNEENLRLRS MLEQISNNYK  120
SLHNYFNSLV LTSNGDQHME QEKTGGLKNQ ETGDGFMMVP RQFMDLGPAA VAETDNRSQS  180
PPSEGQSSEP SGSPSHNSQG LTKDYRTIHP SFADDRKSGD HDWNESAFKL HPAKNGDQAA  240
AGAGEATMRK ARVSVRARSE AAMIIDGCQW RKYGQKLAKG NPCPRAYYRC TMAAGCPVRK  300
QVQRCAEDRS ILITTYEGNH NHPLPPAATA MASTTSAAAC MLLSGSMSSA DGGIMNPNIL  360
IPSSSTVATI SASAPFPTVT LDLTHTPPPH LPRSHFPFPF PATTAAPAHP SYPPQALANS  420
LLNNQSIFSG LQISPGLEAA GQLSLANTVS AAITADPNFT AALAAAITTI IGGGGTAPSN  480
NQNQSSCTTA TATAATTTTT TTASSFLQSQ D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-22251327176WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00209DAPTransfer from AT1G62300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006847281.20.0PREDICTED: LOW QUALITY PROTEIN: probable WRKY transcription factor 31
SwissprotQ9C5191e-112WRKY6_ARATH; WRKY transcription factor 6
TrEMBLW1PFU50.0W1PFU5_AMBTC; Uncharacterized protein
STRINGVIT_10s0116g01200.t011e-141(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.17e-54WRKY family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]